SNP Profiles of IMC 11 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GT	CT	GG	AC	CG	AG	TT	AG	GG	AA	CC
1._RUQ_8	_	_	AC	GT	CT	_	AC	CG	AG	TT	_	_	AA	_
2._IMC_11	_	_	AC	GT	CT	_	AC	CG	AG	TT	_	_	AA	_
3._IMC_11	_	_	AC	GT	CT	_	AA	CG	AG	TT	_	_	AA	_
4._IMC_11	_	_	AC	GT	CT	_	AA	CG	AG	TT	_	_	AA	_
5._IMC_11	_	_	AC	GT	CT	_	AA	CG	AG	TT	_	_	AA	_
6._IMC_11	_	_	AC	GT	CT	_	AA	CG	AG	TT	_	_	AA	_
7._IMC_11	_	_	AC	GT	CT	_	AA	CG	AG	TT	_	_	AA	_
8._GC-04-029-2-11	TT	CC	AC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CC
9._GC-04-029-2-11	TT	CC	AC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CC
10._GC-04-029-2-11	TT	CC	AC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CC
11._GC-04-029-2-11	TT	CC	AC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CC
12._GC-04-029-2-11	TT	CC	AC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CC
13._GC-04-29-2-11	AA	CC	AC	AC	AG	GG	AC	CG	AG	AA	AG	GG	AA	GG
14._RUQ_8	AA	CC	AC	AC	AG	GG	AC	CG	AG	AA	AG	GG	AA	GG
15._MITC-000647	AA	CC	AC	AC	AG	GG	AC	CG	AG	AA	AG	GG	AA	GG
16._IMC_11_Fld#_165_Plt#_2	AA	CC	AC	AC	AG	GG	AC	CG	AG	AA	AG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GG	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
1._RUQ_8	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
2._IMC_11	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
3._IMC_11	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
4._IMC_11	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
5._IMC_11	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
6._IMC_11	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
7._IMC_11	AA	_	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
8._GC-04-029-2-11	AA	CC	CT	GG	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
9._GC-04-029-2-11	AA	CC	CT	GG	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
10._GC-04-029-2-11	AA	CC	CT	GG	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
11._GC-04-029-2-11	AA	CC	CT	GG	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
12._GC-04-029-2-11	AA	_	CT	GG	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
13._GC-04-29-2-11	_	CC	_	CC	GG	AA	GG	GG	_	CC	GG	AA	AC	GG
14._RUQ_8	_	CC	_	CC	GG	AA	GG	GG	_	CC	GG	AA	AC	GG
15._MITC-000647	_	CC	_	CC	GG	AA	GG	GG	_	CC	GG	AA	AC	GG
16._IMC_11_Fld#_165_Plt#_2	_	CC	_	CC	GG	AA	GG	GG	_	CC	GG	AA	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
1._RUQ_8	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
2._IMC_11	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
3._IMC_11	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
4._IMC_11	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
5._IMC_11	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
6._IMC_11	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
7._IMC_11	_	CC	AA	_	CT	_	_	_	GT	_	_	TT	CG	AG
8._GC-04-029-2-11	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
9._GC-04-029-2-11	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
10._GC-04-029-2-11	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
11._GC-04-029-2-11	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
12._GC-04-029-2-11	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
13._GC-04-29-2-11	_	GG	AA	_	AG	CC	GG	_	AA	AA	GG	AA	CG	AG
14._RUQ_8	_	GG	AA	_	AG	CC	GG	_	AA	AA	GG	AA	CG	AG
15._MITC-000647	_	GG	AA	_	AG	CC	GG	_	AA	AA	GG	AA	CG	AG
16._IMC_11_Fld#_165_Plt#_2	_	GG	AA	_	AG	CC	GG	_	AA	AA	GG	AA	CG	AG

Input profile: IMC_11 RUQ_8

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_11 RUQ_8

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._IMC_11

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F423 T1

Dapeng Zhang, 2016

3._IMC_11

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4211 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._IMC_11

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4211 8

Dapeng Zhang, 2016

5._IMC_11

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4211 1 > FP

Dapeng Zhang, 2016

6._IMC_11

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4211 6 > FP

Dapeng Zhang, 2016

7._IMC_11

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4211 2 > FP

Dapeng Zhang, 2016

8._IMC_11 GC-04-029-2-11

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

9._IMC_11 GC-04-029-2-11

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

10._IMC_11 GC-04-029-2-11

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._IMC_11 GC-04-029-2-11

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._IMC_11 GC-04-029-2-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

13._IMC_11 GC-04-29-2-11

50 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 2, Rep: 11, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._IMC_11 RUQ_8

50 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._IMC_11 MITC-000647

50 %
36 shared markers

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USDA-SHRS, United States of America

16._IMC_11 IMC_11_Fld#_165_Plt#_2

50 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 165, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484